After a ton of consideration and looking at different ways to play the videos internally in BEC-e instead of using a pop-up window the decision was made to stay with the videos the way they are and continuing to use the pop-ups. To have them played internally in BEC-e would have resulted in it being played in a window that is much to small for users to be able to see what is happening in the video. The end user experience would have been severely diminished. What I have done to help anybody that is having troubles is to put some links to information on the home page about disabling the pop-up blockers or adding becelearning.com to the exception list. As always if you need any assistance please feel free to email me at firstname.lastname@example.org.